Protein Info for RS_RS00820 in Ralstonia solanacearum GMI1000

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 12 to 479 (468 residues), 434.2 bits, see alignment E=2.9e-134 PF02321: OEP" amino acids 77 to 268 (192 residues), 89.9 bits, see alignment E=9.6e-30 amino acids 295 to 477 (183 residues), 101.8 bits, see alignment E=2.2e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0166)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y315 at UniProt or InterPro

Protein Sequence (480 amino acids)

>RS_RS00820 RND transporter (Ralstonia solanacearum GMI1000)
MCTSTSLILSAAAAVALGGCAVGPDFKAPVPPAASGYTAQPLPAATASAPAPGGEAQHLA
EANVPADWWHLFQSHALDALVDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSA
SAVRQQVNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGGVRRALEASRAQVDMQRYELE
AARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRT
QVAQTEATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQ
RRPDIRVAEAMWHEASANVGVATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSL
TQPLFHGGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVADALHAVHNDARTLQARALAT
DQATQALRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW