Protein Info for RS_RS00625 in Ralstonia solanacearum GMI1000

Annotation: YncE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF10282: Lactonase" amino acids 143 to 227 (85 residues), 38.9 bits, see alignment E=3.1e-14 amino acids 235 to 330 (96 residues), 37.3 bits, see alignment E=9.7e-14 amino acids 307 to 377 (71 residues), 36.5 bits, see alignment E=1.6e-13 amino acids 326 to 464 (139 residues), 64.2 bits, see alignment E=6.2e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0127)

Predicted SEED Role

"surface antigen gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y354 at UniProt or InterPro

Protein Sequence (480 amino acids)

>RS_RS00625 YncE family protein (Ralstonia solanacearum GMI1000)
MQPCPSEAPRVLHALTRRGMALALAATLSLVLSACGGGGDDTAAATTAPPSSNAVTPSPS
PAPAPTYSVGGTVAGLGSGLSVKLLNNGGDAVTVTANGNFQFPTALASGAQYAATVGTRP
SGQQCTIANDSGTMGSANVTNIAVTCSTRPLFAYTANSNDNTVSAYTLDPTTGAPTLIGT
PISVGQGPLSLIADKAGKFVYVVDGNDNSVTTLAIDSETGLLTISGTPATTGMQPFNIAR
TPASTFAYTTNFGDNTLSGFSINATTGVLTSIGTIAAGTNPYTIVINKAGTFAYVVNAAS
GAGTPSAMVFSINGATGALTAVGSPVATGNAPFYIALHPAGTFAYVANSQDNTVQVYAIN
QTTGALTAVGSPVATGQGPIPIAIHPSGLFAYVGNVFDNTVSLYAINTGTGALTLKSTLA
TGNDPLAITLNDAGSIAYIVNGVDHDVVAYAVDSSTGALTSVATAQTGLLPRAFAIVAVP