Protein Info for RS_RS00400 in Ralstonia solanacearum GMI1000

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 795 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 136 (18 residues), see Phobius details amino acids 142 to 159 (18 residues), see Phobius details amino acids 170 to 186 (17 residues), see Phobius details amino acids 191 to 208 (18 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 591 to 608 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0079)

Predicted SEED Role

"FIG00977514: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y3A1 at UniProt or InterPro

Protein Sequence (795 amino acids)

>RS_RS00400 hypothetical protein (Ralstonia solanacearum GMI1000)
MSDRLQSMKLQINSTLIQNVMWARIWRLLIVVTAVCAFVPWLPVMPQAGLDHSWVLGMNQ
AVAQGLVFGRDMIFTFGPYASIYTKSFHPATDHLMVAGALFLGLIYGAGLVLLTRERGAL
PLAGLCLALALVAGLPQSQDTLLFSYPLIVSLYCFGLSDKAVSDQRARNRSTISVVVLFL
PFGLLPLIKGSLVALCLAATVFAVIRLISLGRREWAIAAPVAQVVALIVFWLAAGQPLSG
LPGYFQSMAQIVSGYTEAMAYPGAPSEIILYLIAAVVLLVSVLRDSGETTIGKRLVLLLP
LVVYFFVVFKAAFVRHDGHALTAGTSILLASAILAFRLYKRSLLFVLSVSLVTWISIDSR
HLALSAAALLDDAVSPYFSAWAGAQARLADSQALRRDFDAALAKIRAQHALPLREGTADI
YSHEQSDLIASGNRWNPRPVLQSYSAYTPALAWANRDHLQGPAAPDTIFFRAETIDGRLP
ALDDGPSWFALLGHYRPENLQGGFLSLRKETSAGERIRFDAAGEGRFSFDQQVSVPEGQG
PVFVEIDVEKSLAGRGMNTLYKVDPLVIVLSLENGEMMQFRLPSEMARSGFMVSPVVLSA
SDFGLLYANAYAQGSRVKSFFIHAFGGDWQWKNTYTVHFKSVTVAPRAGALASLHFNQPV
KAPAGTNIHVVNQCEGSIDTVNGVSPSSAGFSARGLLQVRGWLTVQGEQQRLPTKPLLVL
GNAEGELAFIETRRTIRPDIAAHFGSDLLQWAGYDAIADVSQVTGGRVLGLAFEQNGQIG
ICPQFGVAGRFSGAE