Protein Info for RS_RS00315 in Ralstonia solanacearum GMI1000

Annotation: rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 51 to 68 (18 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 103 to 128 (26 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 286 to 306 (21 residues), see Phobius details amino acids 317 to 344 (28 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 18 to 375 (358 residues), 417 bits, see alignment E=3.2e-129 PF01098: FTSW_RODA_SPOVE" amino acids 22 to 376 (355 residues), 334.9 bits, see alignment E=2.8e-104

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 100% identity to rso:RSc0063)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y3B7 at UniProt or InterPro

Protein Sequence (380 amino acids)

>RS_RS00315 rod shape-determining protein RodA (Ralstonia solanacearum GMI1000)
MDKRRAFNVIKSLFTGFDKPLALIVFLLLGTGLIALYSAAIDMPGRVEDQVRNILLSFVV
MWIIANLPQQTLMRFAVPLYTAGVALLIGVAMFGLIRKGARRWLNIGVVVQPSEIMKIAM
PLMLAWYFQKREGVIHWYDYLAAAVLLLVPVGLIAKQPDLGTALLVLAAGIYVIYFAGLS
WRLIVPVMVIAVTAVTLVVSFESRICAPGVNWPILHDYQQHRICTLLDPTTDPLGKGFHT
IQSIIAIGSGGVTGKGWLKGTQTHLEFIPEKHTDFIFAVYSEEFGLVGNAILVFLYLLLI
LRGLVIAANAGTLFGRLLAGSITLIFFTYAFVNMGMVSGILPVVGVPLPLVSYGGTALVT
LGMGLGILMSIARQKRFVQT