Protein Info for RR42_RS37325 in Cupriavidus basilensis FW507-4G11

Annotation: cellulose synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1467 signal peptide" amino acids 1 to 54 (54 residues), see Phobius details PF13432: TPR_16" amino acids 65 to 126 (62 residues), 39 bits, see alignment (E = 7e-13) amino acids 316 to 373 (58 residues), 25.6 bits, see alignment (E = 1.1e-08) amino acids 391 to 436 (46 residues), 20.5 bits, see alignment (E = 4.3e-07) amino acids 432 to 477 (46 residues), 24.3 bits, see alignment (E = 2.7e-08) amino acids 725 to 786 (62 residues), 15.7 bits, see alignment (E = 1.4e-05) amino acids 760 to 822 (63 residues), 16.4 bits, see alignment (E = 8.3e-06) PF14559: TPR_19" amino acids 70 to 132 (63 residues), 35.1 bits, see alignment (E = 1.1e-11) amino acids 317 to 380 (64 residues), 34.2 bits, see alignment (E = 2e-11) amino acids 430 to 485 (56 residues), 33.9 bits, see alignment (E = 2.7e-11) amino acids 505 to 570 (66 residues), 45.7 bits, see alignment (E = 5.5e-15) amino acids 730 to 787 (58 residues), 35.7 bits, see alignment (E = 7.1e-12) amino acids 765 to 830 (66 residues), 29.9 bits, see alignment (E = 4.7e-10) PF13174: TPR_6" amino acids 93 to 125 (33 residues), 21.6 bits, see alignment (E = 2.1e-07) amino acids 421 to 451 (31 residues), 12.5 bits, see alignment (E = 0.00016) PF13176: TPR_7" amino acids 759 to 787 (29 residues), 16.6 bits, see alignment (E = 5.5e-06) PF05420: BCSC_C" amino acids 1102 to 1444 (343 residues), 352.5 bits, see alignment E=2e-108

Best Hits

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YSW6 at UniProt or InterPro

Protein Sequence (1467 amino acids)

>RR42_RS37325 cellulose synthase (Cupriavidus basilensis FW507-4G11)
MSNRKRPAMNGRANTPRSASGKHIAADTARGKGLRAKTLVLSLLTAFAAAATAQEDPVKL
LVDQGKYWQERGRSDRAAEAWQKILRLNPAQPEALYGMGVAEAEAGRPDGARTYLERLKK
AQPNSPLVARLTQVISSGGATQQVEQARQLARSGQSEEAVKRYQQAAGGAVPQGNLALEY
YQTLGGTAQGWDEARKGLEQLARANPSDNRAQLALAQHLTYRESTRRDGIRQLEALSKSS
DVAGKASESWRRALTWLGGRPADAPLYQAWLASHPDDATIRAKLDGVKAQQQQQQATQAA
GAAGNPVRQIVQQGFDAMDAGDLERAGDRFQTALQERPGDADALGGMGVLRLKQEKFAEA
LDFLDQAAKRGAGGRYRSAQNSATYWLLSEQASAARGAGNRAEARSLLERAVKLDPREPS
AQVALADVMAEEGQYAPAEAAYRRVLKQQPDNPDATRGLVGVLAAQNKSAEALAIVQNLT
PAQQDKVGSLGKLRAEEARGQARAALQRGDTAGARRALEDAMAADPTNPWVRLDVARAYA
SMGLKEQARSVMDGLLLSNPNMPDALYASALLSAETGDWQSGLEALERIPPQNRTRDMGT
LQRRLWVHAEAERASGLAAAGQQAAALGVLQQAERYAQQDPDQLGALALAYADAGDEARA
LSLMRNVMGRTVRPDIGMQLQYAAILLKTKQDVELAGVLRQLANANLSTSQRRDYDDLRV
AYIVRQADALTESGDLVAAYDMLAPALSERPGNSAVRASLARMYAQAGENKKALTLYESV
LEKDPRNLDLMLAAIGTATAAKEYSWAEGTLQMALAQAPGSPKVLTAAGRLYRAQGKTSR
AAEYFRAAVAAENAAGISSAGARPDGAGFDRVPSNPFVGLPGQRGSSQLPPPGSQAPYLI
VPGPTRAAAAPQPAMAPAPVMMTAGAQASQPYIPAPVSAAGQGMAAEIQQPQAYYAQPVQ
APMPMQAPASTRGKNTRAAKAPAQAYPASQAYPAYPANAQAAQQPGVPYPVPQQAVAPQY
PAAQYAAPAAGGYAAAPAPGATARQPIGAQSRAPWLAEADSQANPTGPKTAQQELNEIES
QRTSTLAGGPVLRGRNGDSGMSQLTEMQVAAEAKMAVGNGKLVARVTPVALDAGSVGSDF
NSASRFGGGPLAVPVGGALVNSAGTRLQSASAGQQNAFGVALGVAYESDRIKADIGSTPL
GFRYTDVNTGVRLNLPLTQRTTLSLGASRRPVTDSLLSYAGARDDRAGLQWGGVMNSSGR
VDLGWDDGFFGIYGYGGYGLLTGHDVKRNTRWEGGGGFYLRLVDNAEQRLMSGVNFTSMG
YADNLRYFTFGQGGYFSPQTYFAVTVPLSLAGRSGRLAYNVRGALGMQAFREDASDYFPT
DRAAQSAAGNNVYPGQSKTGLAYNLVGSMEYQAAQQLFVGGMLGIDNARDYRQWYAGVYV
RYALQRQTGQIAFPPVAPQSAVGPAPF