Protein Info for RR42_RS37050 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF10670: DUF4198" amino acids 25 to 250 (226 residues), 212 bits, see alignment E=5.4e-67

Best Hits

KEGG orthology group: None (inferred from 81% identity to reh:H16_B2502)

Predicted SEED Role

"Nikel transport family protein NikM"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGJ8 at UniProt or InterPro

Protein Sequence (274 amino acids)

>RR42_RS37050 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MKTFATKLSVRAAALALAALMPLAAHAHRQWLLPSATVLSGSDPWVTVDAAVSNDLFYFE
HVPLRLDNLAVTAPDGAAAKVENASTGRYRSTFDVHLTQPGTYKVAMVNHGLFASYKVDG
QAKRWRGSPEAFAKEVPAGAQDLQVTQADSRLEAFVTAGKPTAKVLQTTGRGLELAPVTH
PNDLVAGDAASFRLLLDGKPAANVKVAVVPGGIRYRDQLQEMALTTDADGKFSVKWPAPG
MYWMEAEVRDDKVAVKQATARRASYAATVEVLPQ