Protein Info for RR42_RS36975 in Cupriavidus basilensis FW507-4G11

Annotation: polar amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 23 to 48 (26 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 20 to 111 (92 residues), 59.5 bits, see alignment E=1.9e-20 PF00528: BPD_transp_1" amino acids 38 to 209 (172 residues), 59.8 bits, see alignment E=1.5e-20

Best Hits

KEGG orthology group: None (inferred from 73% identity to reh:H16_B2488)

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YWW1 at UniProt or InterPro

Protein Sequence (212 amino acids)

>RR42_RS36975 polar amino acid ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MVLRQLPYLLAGTFPNGPVAGAALTLWMALLACAGATVLGIGVAALLDLAPAPLARAVRA
LLACLRAIPVLMLIFWAYFLLPMLAGVHVGEVQTVVLALALIGAAYIAQVMAAGFDAIGR
GQRNAALALGMTPLQALWQVVLPQTLRAMLPSLGNVWVSLAKDTSLAYIVGVVELSTVAT
QVNGRSVGYAAQVFLAVAFLYFLICLAIESVA