Protein Info for RR42_RS36825 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 12 to 41 (30 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 134 to 158 (25 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 233 to 250 (18 residues), see Phobius details PF01925: TauE" amino acids 15 to 244 (230 residues), 95.8 bits, see alignment E=1.6e-31

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 77% identity to cti:RALTA_B2167)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGF3 at UniProt or InterPro

Protein Sequence (251 amino acids)

>RR42_RS36825 membrane protein (Cupriavidus basilensis FW507-4G11)
MESTFLNGQTTLIGFTFLLAGLVKGVVGLGLPTVAVGLLGLAMPPAQAAALLVAPSMVTN
VVQLYTGPRLGELARRMWPLLAAICVGTWLAAALLPPSLMVHATAWLGAALVLYAVLGLM
AFHPKVPLAAEGWLAPLIGVVTGAITAVTGVFVIPAVPYIQGLGLDRETLVQALGLSFTV
STIALAVSLVMHGALLHTPVLGASLLALVPALAGMFIGQWLRHRISAARFRKLFFCGLLL
LGAELALRGFF