Protein Info for RR42_RS36660 in Cupriavidus basilensis FW507-4G11

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00392: GntR" amino acids 24 to 86 (63 residues), 61 bits, see alignment E=6.9e-21 PF07702: UTRA" amino acids 143 to 242 (100 residues), 41.2 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 76% identity to cti:RALTA_B0383)

Predicted SEED Role

"predicted biotin regulatory protein BioR (GntR family)" in subsystem Biotin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YWM7 at UniProt or InterPro

Protein Sequence (255 amino acids)

>RR42_RS36660 GntR family transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MPNPAFTALPASSDLLSRSRQPVYLQLATIFRRHIESGEWRQGERIPSLEQLCREFGVAR
MTMHHALSLLDEEGLLTRERGRGTFVKASCRERRAMRLPVSWDQVVAVGEQLDTEALSES
DGTVTLPDELGMPCAATRAPGYHFLRRLHRIEQRPFALGEVFIEASVFAREPEAFRHGAS
VPVLDRFPQLKVTAARQRLSIIAAGAESAARLALPVGAPVAELRRYACVDGVIVYYARIE
FPSEFVCLDFDLLAA