Protein Info for RR42_RS36475 in Cupriavidus basilensis FW507-4G11

Annotation: SpoVR family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 PF04293: SpoVR" amino acids 9 to 432 (424 residues), 584.5 bits, see alignment E=9.9e-180 PF24755: YcgB" amino acids 436 to 485 (50 residues), 79.3 bits, see alignment 1.7e-26

Best Hits

Swiss-Prot: 64% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 92% identity to cti:RALTA_B0550)

Predicted SEED Role

"FIG004684: SpoVR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YQW4 at UniProt or InterPro

Protein Sequence (508 amino acids)

>RR42_RS36475 SpoVR family protein (Cupriavidus basilensis FW507-4G11)
MAYLSTGSEWTFELIQRYDREIARIAGDFGLDTYPNQVEIITAEQMLDAYASSGLPVGYS
HWSYGKHFLASERSYQRGHMGLAYEIVINSNPCIAYLMEENTMPMQALTIAHACYGHNSF
FKGNYLFRTWTNADAIIDYLLFAKNYVAECEQRYGEQEVEALLDSCHALQNYGVDRYKRP
KKLSIAEEQARQTERENYLQTQVNDLWRTLPKHRAHALEDDEGFERDAAFPPEPQENLLY
FIEKNAPKLAPWQREIVRIVRKIAQYFYPQRQTKVMNEGWATFWHYTILHQLYEEGLVND
AFMMELLQAHTNVIYQPPYNSPYYSGLNPYTVGFLMFQDLRRMCENPTEEDYRWAPEFAG
SDWRKTLDFAMRNFKDESFLLQFLSPRVIRELKLFSVLDDDREGKLRVTAIHDDEGYRNI
RQLLANQYDLSNMEPNIQITNVDVGGDRSLTLRHLQNDRRPLAQNFDEVIRHVTRLWGFT
VRLEVAYEDGRRESKYECKPERRHRKAA