Protein Info for RR42_RS35825 in Cupriavidus basilensis FW507-4G11

Annotation: flagellar transcriptional regulator FlhD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 105 PF05247: FlhD" amino acids 1 to 102 (102 residues), 153.8 bits, see alignment E=7.3e-50

Best Hits

Swiss-Prot: 97% identical to FLHD_CUPTR: Flagellar transcriptional regulator FlhD (flhD) from Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)

KEGG orthology group: K02403, flagellar transcriptional activator FlhD (inferred from 95% identity to reu:Reut_B5604)

Predicted SEED Role

"Flagellar transcriptional activator FlhD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YQJ4 at UniProt or InterPro

Protein Sequence (105 amino acids)

>RR42_RS35825 flagellar transcriptional regulator FlhD (Cupriavidus basilensis FW507-4G11)
MESSEVLQEIREVNLAYLLLAQRLVRENHLEAMFRLGVSKEIADILAKLTPAQLVKLAAS
NMVLCRFRFDDHALLSTLTHTAKSHDMQQIHAAILLARQPVESLN