Protein Info for RR42_RS35480 in Cupriavidus basilensis FW507-4G11

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 37 to 58 (22 residues), see Phobius details amino acids 86 to 111 (26 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 250 to 273 (24 residues), see Phobius details amino acids 285 to 307 (23 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 373 to 391 (19 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 262 (242 residues), 92.3 bits, see alignment E=4.5e-30 amino acids 244 to 389 (146 residues), 63.7 bits, see alignment E=2.3e-21 PF00083: Sugar_tr" amino acids 48 to 192 (145 residues), 26.6 bits, see alignment E=4.3e-10 amino acids 225 to 380 (156 residues), 34 bits, see alignment E=2.4e-12

Best Hits

KEGG orthology group: None (inferred from 80% identity to reu:Reut_C6190)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YNT6 at UniProt or InterPro

Protein Sequence (399 amino acids)

>RR42_RS35480 MFS transporter (Cupriavidus basilensis FW507-4G11)
MAMTAPARTLSQIPTGIWMLGFVSLLMDVSSEMIHSLLPVFMVTTLGASALAVGLIEGAA
EATALVVKVFSGALSDYLGKRKGLAVVGYALGALSKPLFAIAPGIGTVLGARLVDRVGKG
IRGAPRDALVADIVPTHLRGAAFGLRQALDTVGAFLGPLIAIGLMLLWANNFRAIFWVAV
IPGALSVALLVFGVREPEERQGARRVSPIKRTNLARLNAAYWFVVIIGAFFTLARFSEAF
LVLRAQQLGLPLFLAPLVLVAMNLVYSLSAYPFGKLSDELSHKKLLVWGLLVLILADIVL
ATGSHWAVTLFGVAIWGLHMGMTQGLLATMVADAAPVELRGTAFGVFNLASGLALLVASA
LAGWLWDRLGAEFTFYAGAAFSVATMLLILGSRKGSRGG