Protein Info for RR42_RS35215 in Cupriavidus basilensis FW507-4G11

Annotation: peptide ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF00005: ABC_tran" amino acids 34 to 185 (152 residues), 110.3 bits, see alignment E=1.3e-35 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 324 (90 residues), 96.2 bits, see alignment E=4.8e-32 PF08352: oligo_HPY" amino acids 237 to 304 (68 residues), 68.5 bits, see alignment E=5.2e-23

Best Hits

Swiss-Prot: 56% identical to APPF_BACSU: Oligopeptide transport ATP-binding protein AppF (appF) from Bacillus subtilis (strain 168)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 82% identity to rme:Rmet_4580)

MetaCyc: 56% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppF (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YNK9 at UniProt or InterPro

Protein Sequence (329 amino acids)

>RR42_RS35215 peptide ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MGDEILRVENLKVHFPVTQGVFIKRQVGSVKAVDGVSFTLRRGETLGLVGESGCGKSTTG
LAIIKMLAASGGRIAFDGDDFATFSKAQEKNFRRSVQMVYQDPFGSLNPRMKVCDIIGEP
LEVHGMANDREHYRARIAELLQMVGLLPYMADRYPHEFSGGQRQRIGIARALAVEPSLIV
CDEPVSALDVSIQAQVVNVFMELQRRLGLTYIFIAHDLAVVRHISDRIAVMYLGRIVEIA
SRDALYANPRHPYTKALLSAVPVASVEAEAKRQRIVLKGEVPSPLNPPSGCRFHPRCAQA
TQRCRVEDPVLRERGDGQMVACHLEGLEG