Protein Info for RR42_RS34935 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome C oxidase subunit IV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 94 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details PF03626: COX4_pro" amino acids 6 to 75 (70 residues), 52.8 bits, see alignment E=2.2e-18

Best Hits

KEGG orthology group: None (inferred from 81% identity to pol:Bpro_0730)

Predicted SEED Role

"Putative subunit of Alternative cytochrome c oxidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (94 amino acids)

>RR42_RS34935 cytochrome C oxidase subunit IV (Cupriavidus basilensis FW507-4G11)
MGLYLKIWALLFVLSTLSYLVDYFHFEGYLRWTLILLFMVMKAGLIVAVFMHMAWERLAL
ICAILLPPLCLLVLVGLMAAEADYTFLLRGVFFR