Protein Info for RR42_RS34870 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 45 to 70 (26 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 315 to 341 (27 residues), see Phobius details amino acids 353 to 378 (26 residues), see Phobius details amino acids 388 to 406 (19 residues), see Phobius details amino acids 413 to 429 (17 residues), see Phobius details amino acids 465 to 487 (23 residues), see Phobius details PF01970: TctA" amino acids 20 to 438 (419 residues), 550.7 bits, see alignment E=9.6e-170

Best Hits

Swiss-Prot: 63% identical to YZ2R_AGRVI: Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region from Agrobacterium vitis

KEGG orthology group: None (inferred from 96% identity to rme:Rmet_3964)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YVE8 at UniProt or InterPro

Protein Sequence (500 amino acids)

>RR42_RS34870 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MELIDHLALGFSTALSLQNLAYAFLGCVLGTLIGVLPGLGPLATIAMLLPVTYTLPPVAA
LIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFA
GCVATLILAAFATPLSELAFKFGPAEYFSLMCLGLIGAVVLASGSLPKAVAMIVLGLLLG
LIGTDVNSGAARFSFDIPELTDGIDFVALAMGMFGFAEIIANLEQKEARETFTDSVTNLW
PTREDFRRMIPAVLRGTFLGSALGILPGGGAALASFAAYSLEKKTSKYAHEFGKGAIEGV
AGPESANNAAAQTSFIPLLTLGIPPNAVMALMVGAMTIHNIQPGPQVMTSNPALFWGLIA
SMWIGNLMLIILNLPMIGVWVKLLTVPYRYLYPAILVFCGIGVYSVNNQTFDVFMAAGFG
IIGYLFLKLKCEPAPLLLGFVLGPMMEENFRRSLLLSRGEFTVFVTRPLSLGLLIAAASL
VAIVALPSIKAKREEAFQEE