Protein Info for RR42_RS34525 in Cupriavidus basilensis FW507-4G11

Annotation: type VI secretion protein VasK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1191 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 359 to 382 (24 residues), see Phobius details PF06761: IcmF-related" amino acids 411 to 738 (328 residues), 204.5 bits, see alignment E=4.3e-64 PF21070: IcmF_helical" amino acids 892 to 996 (105 residues), 125.4 bits, see alignment E=1.6e-40 PF06744: IcmF_C" amino acids 1001 to 1094 (94 residues), 72.3 bits, see alignment E=5.2e-24

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 65% identity to rme:Rmet_0633)

Predicted SEED Role

"probable membrane protein YPO1482"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YN34 at UniProt or InterPro

Protein Sequence (1191 amino acids)

>RR42_RS34525 type VI secretion protein VasK (Cupriavidus basilensis FW507-4G11)
MNEYKPQPVARYLCIAILILFVAAGLAVWFEGPGQGLSRQQVKLFEISLAIGCIVSLLLA
RYYEWLALKIQLLRARLWVANYDASKRSEAATAGDGGPAARPEQLATIRDALHIHHGLRW
RYRQPWLLLTGDDAAIARLLPELAEQGWLITPDAVLLWSKTGKEGWPEADWLKQLYRLRR
RRPVDAVIFTTDSATDLQAQRRGAHPDGMRLARIADLLRWSAPVYLLDVAQARTVAHGLM
PVIGCELPRQADADAIEGALRTLREQLAQRLVVQLKDGNRDRYMGELSQRLDTRGKALAD
WIAGSGGRQRRRIAVDGIVFAPYPRPVAGDADVQSSIDLPLWHYLGEAARRRPGRRVGWH
PVTVSAIVGLTAIGLWSAGMLVSGVVNSRDMHAARQSVDDFQSAPNPAARLRALIALQQQ
IERYEYRTQHHTPLATRFGLNRDPAVLAALWKPYAQASRELLVAPVQRDLEASLVDLAQL
RTTVLDAATNRVALSGHQALKTYLMLANPERAEPAFLAPQLVRHWSTDARITPGERQDLA
ERLLTFYAAHLKSNPANPAGRIEPRPELVAGARQTLLAVIGERNAEDTIYRGVIQAFGES
AGSKYPDQTLAALTAGTDPRGLVRAAAIVPGVFTRQAYEGYVAPAIELAARRTEIANDWV
LTDGKPLPQPSASRSAEALQAALTEQYFADYAERWQDFMNSLQWEAAPTLPAAIAQLKLM
ADARQSPVIALMKSLEYQGGAGARKDSLSDTLVARTQDLLGKKPAGPEVAKPDAAGPLGA
AFGPVLRLVAQGQPGTSAGTNAGTSGDLSLQRFLDRATALRLRLQQVGNSADADAQARQM
AQALFQGKGSELADTHAYAQLMAASLGSQWAGMGETLFVRPIAQATQTVLQPAQASLNDA
WRQSIAMTWSRSFAGRYPFADTANDASLVELARFLRPHSGLIGSFLGTQLAGVLELQGDQ
WLPAAAGGQAQSFDPAFLNAINTLQRLAAHLLAQGEPQYRFEFRPIPTPGLIDTLLTLDG
QTLHYYNQRETWQAMTWPGKTLQDPGTRLQWQTERAGTSKSYEFGGRWGLVRMLERAHIE
PVDSANYQLTWQARPEELDGQEALEGPKAGAERQADAHGRTFAEDPDSLTARSAQAPVAA
DVTYPVRYLMRTEVGQGPLEMLALRGFVLPTRIFVGREPQAAARAVPGPRR