Protein Info for RR42_RS34435 in Cupriavidus basilensis FW507-4G11

Annotation: transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF13579: Glyco_trans_4_4" amino acids 15 to 178 (164 residues), 68.9 bits, see alignment E=2e-22 PF13439: Glyco_transf_4" amino acids 15 to 174 (160 residues), 55.6 bits, see alignment E=2.1e-18 PF20706: GT4-conflict" amino acids 199 to 317 (119 residues), 40 bits, see alignment E=7.3e-14 PF00534: Glycos_transf_1" amino acids 203 to 363 (161 residues), 99.3 bits, see alignment E=5.6e-32 PF13692: Glyco_trans_1_4" amino acids 208 to 341 (134 residues), 69.8 bits, see alignment E=8.9e-23 PF13524: Glyco_trans_1_2" amino acids 292 to 380 (89 residues), 30.2 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 66% identity to bpy:Bphyt_0828)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF81 at UniProt or InterPro

Protein Sequence (402 amino acids)

>RR42_RS34435 transferase (Cupriavidus basilensis FW507-4G11)
MNILHLLSSIDPRLGGPVECVRQGSAQLVAQGHRVEVLSLDPPDAPYLADFPLPLHVLGP
ARGYYHYSPRLVPWLREHAQEFDAVIINGLWQYHGFGAWRALRKLQVPYYVYPHGMLDPW
FKRAYPRKHLKKWLYWPWAEYRVLRDARAVLFTAEEERRLASQSFWLYRARESVVSLGTQ
SPPPEHDAGGVALRERFLAAYPELRGKRIVLFLGRVHEKKGCDLLIDAFARVAALDPQAQ
LVIAGPDSAGWVPRLQSQAAARGIGARVSWPGMLHAEMKWGAFYASDVFALPSHQENFGI
AVAEALGCAVPALISDKVNIWREIERDGAGLAAPDTVEGCEALLRRWLSMDDARRAQMRA
SAKATFNRRFTVESMARDLLRVLQSGEPAQAVMEPEWLGRDA