Protein Info for RR42_RS34370 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 72 to 100 (29 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 67% identity to reh:H16_A2431)

Predicted SEED Role

"FIG00975869: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF68 at UniProt or InterPro

Protein Sequence (179 amino acids)

>RR42_RS34370 membrane protein (Cupriavidus basilensis FW507-4G11)
MELHLHMQPHHFARRAPDWRAAAIAGLIAGTLYVVLELLTARFVLYQGAWGTVKMVAALM
LGRQALASADAFSWTIVLAAGIVHFGLSIVLATILATLIASFRFDSSIGMATLAGAVFGV
LVYLVNFYVMGRYFNWFDEARGWESLFAHIMFGVIAADAYANLERREPDAPGMPGMPGG