Protein Info for RR42_RS34150 in Cupriavidus basilensis FW507-4G11

Annotation: cupin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF05899: Cupin_3" amino acids 73 to 125 (53 residues), 26.1 bits, see alignment E=1.4e-09 PF07883: Cupin_2" amino acids 77 to 141 (65 residues), 51.2 bits, see alignment E=2.1e-17 PF00190: Cupin_1" amino acids 78 to 127 (50 residues), 34.1 bits, see alignment E=5.1e-12 PF02311: AraC_binding" amino acids 83 to 151 (69 residues), 40.7 bits, see alignment E=4.8e-14 PF03079: ARD" amino acids 85 to 139 (55 residues), 27.7 bits, see alignment E=7.2e-10

Best Hits

KEGG orthology group: None (inferred from 86% identity to reu:Reut_B4417)

Predicted SEED Role

"PROBABLE SIGNAL PEPTIDE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YMW0 at UniProt or InterPro

Protein Sequence (155 amino acids)

>RR42_RS34150 cupin (Cupriavidus basilensis FW507-4G11)
MHRFAALSAVPVAFACGYLAAHMGVPLAHAQTPPATLAPLIINLAAMTNEDIGPQIPNMG
TLRTKGLVATPHGTVAVQSGNVPKHYHTSADEIQYVISGKGIFWLGSEQREVGPGDLIVI
PKGVAHAGSIATSGDFKALAIKLPPQAAGDTHLLP