Protein Info for RR42_RS34105 in Cupriavidus basilensis FW507-4G11

Annotation: MBL fold metallo-hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00753: Lactamase_B" amino acids 51 to 110 (60 residues), 32.7 bits, see alignment E=7.3e-12 PF12706: Lactamase_B_2" amino acids 63 to 292 (230 residues), 72.8 bits, see alignment E=3.1e-24

Best Hits

KEGG orthology group: None (inferred from 89% identity to rpi:Rpic_0855)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>RR42_RS34105 MBL fold metallo-hydrolase (Cupriavidus basilensis FW507-4G11)
MRIYRLLLASIVALGALPPGQANGEVTETRTGTHLITLGTRGGPIPAKDRAQSSNLLIVD
GTYYLVDAGDGVLRRLTQAGVNFRQIGKVFITHGHDDHTAGLGTLMSVAWDFQRHDPIAV
YGPPGTATLVKGAIQYFTVNAEIRWAEGRRTPLADVFVGHDVVPGPIYQDKNIQVTAVEN
THFHIPEGSPYYGKYKSYSYRFQTPDRVVVFTGDTGPSDAVTELARNADILVSEVGSSED
VKQVLVKNGTWQGMTAEQQTAFMRHEVEEHLTPDEVGRMAARAHVRTVVLSHLLPTVNEH
DDYLRYVTEVKKFFSGQVVVAKDLMEF