Protein Info for RR42_RS33820 in Cupriavidus basilensis FW507-4G11

Annotation: arabinose transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 transmembrane" amino acids 5 to 27 (23 residues), see Phobius details amino acids 34 to 59 (26 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 201 to 225 (25 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 326 (318 residues), 147.4 bits, see alignment E=7.9e-47 amino acids 222 to 381 (160 residues), 35.2 bits, see alignment E=1.1e-12 PF06779: MFS_4" amino acids 13 to 373 (361 residues), 35 bits, see alignment E=1.6e-12 PF00083: Sugar_tr" amino acids 40 to 174 (135 residues), 26.2 bits, see alignment E=5.7e-10

Best Hits

Swiss-Prot: 43% identical to YTBD_BACSU: Uncharacterized MFS-type transporter YtbD (ytbD) from Bacillus subtilis (strain 168)

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 76% identity to azc:AZC_0284)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YP93 at UniProt or InterPro

Protein Sequence (397 amino acids)

>RR42_RS33820 arabinose transporter permease (Cupriavidus basilensis FW507-4G11)
MPLALYALTAGAFGIGVTEFIIMGLLLEVGADLGVSIAAAGLLISGYALGVVAGAPVMTV
LTARWPRKTALLGLMVIFTIGNAACALAPNYALLMAARVLTALAHGTFFGVGSVVATGLV
APHKRASAIAVMFTGLTVASVLGVPFGTWLGQAYGWRASFWAVAAVGLLAVLVIALAVPG
ERAAPPAPDLRRDLRALMRRPVLLGLLTTVLGYAGVFAVFTYIAPILTQITGFADSAVSP
ILLVFGVGLVAGNLLGGKLADRHLQATVLGSMLALAVVLGLMSFVLHSKVLSVIFIGLLG
VAAFATVAPLQMWVLERASGAGQSLASSFNIAAFNLGNAIGAWLGGVVITRGPGLGAVTW
VAALVPVAAVAVALLAIRLDRGMPADGGVNLASPPLH