Protein Info for RR42_RS33785 in Cupriavidus basilensis FW507-4G11

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF07366: SnoaL" amino acids 10 to 116 (107 residues), 49.2 bits, see alignment E=4.7e-17 PF12680: SnoaL_2" amino acids 12 to 115 (104 residues), 81.9 bits, see alignment E=4.7e-27

Best Hits

KEGG orthology group: None (inferred from 84% identity to reh:H16_B1892)

Predicted SEED Role

"Ketosteroid isomerase-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>RR42_RS33785 transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MANPQVTAATLQAFSDAWNRHDIEALMGFMAEDCVFHAVAGSELFGRSFEGRAAVREGFQ
LAWQAFPDAAWLDGEHFVAGERGVSESTFRGTKADGTRIEARMVDVFTFRDGKIAVKNAY
RKDRPPVAAASSGAAN