Protein Info for RR42_RS33410 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome C peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 341 to 364 (24 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 442 to 466 (25 residues), see Phobius details amino acids 477 to 500 (24 residues), see Phobius details amino acids 541 to 562 (22 residues), see Phobius details amino acids 873 to 893 (21 residues), see Phobius details amino acids 899 to 920 (22 residues), see Phobius details amino acids 930 to 951 (22 residues), see Phobius details amino acids 972 to 991 (20 residues), see Phobius details amino acids 1003 to 1028 (26 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1035 (1035 residues), 1140.5 bits, see alignment E=0 PF00873: ACR_tran" amino acids 6 to 1029 (1024 residues), 964.4 bits, see alignment E=3.4e-294

Best Hits

KEGG orthology group: K07239, heavy-metal exporter, HME family (inferred from 94% identity to cti:RALTA_B1555)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YMI4 at UniProt or InterPro

Protein Sequence (1042 amino acids)

>RR42_RS33410 cytochrome C peroxidase (Cupriavidus basilensis FW507-4G11)
MLKSLVEAAIKQRLVVCVLAVVLFFFGLRAATKLSVDAFPDVTNVQVQIATEATGRSPEE
VERFVTVPVEMAMTGLPGLEEMRSLNKAGLSLITLVFTDATDVYFARQLVMERLIEVAGR
MPEGVTPVLGPVSTGLGEVYQYTLDRVDDGNRALTAEELSERRIAQDWVVRPLLRSIPGV
AEINSQGGFVRQYQVLVNPDRMRHYQVTLQQVYQSLARNNANSGGGVLPHYAEQYLIRGV
GLARGVEDIGSIVLKEVAGTPVYVRDVANVTIGHEVRQGALVKNGQTESVGGIVMMMRGG
NAKEVVSRVKARVAEINERGMLPGKLQIVPYYDRSELVDSALWTVTKVLLEGVVLVVIVL
FLFLGDVRSSVIVLATLVLTPLMTFMVMNQVGLSANLMSLGGLAIAIGLMVDGSVVVVEN
AFERLGHRDKSGMSGMSKTEILVKAVQEVATPVIVGVGIIILVFLPLMTLTGMEGKMFAP
LAFTISIALAISLFLSLTLSPVLSSYLLKGGAEHDTWLIAFMKRHYLRMLHWALNHSRKT
VIGAVVAFMATVAIVPLLGTSFIPEMKEGSIVPALDRVPNISLEESVKLEMEANKLVLSV
PGVKSVVSGVGRGESPADPQGQNESTPIASLKDRDEWPDGWTQDDIANAIREKLKAIPGV
QIVMAQPISDRVDEMVSGVRSDVAVKVFGDDLDKLRDLAGEIARVAGGIPGSQDIRIERI
SGQQYLSIEIDRQAIARYGLNASDIHDIIEIAIGGKRATDIFEGERRFAAAVRLPEAFRD
NVQAIRQLLVATPNGAQVPLQSVARIEVTDGPAQISREMAKRRVVVMINVKDRDLGGFVA
ELQQAAQAKVKLPEGYYLEWGGQFQNMERAMGHLKIIVPVTIAAIFFLLFLLFNSVRFAT
LIITVLPFASIGGIIGLFVTGEYLSVPASVGFIALWGMAVLNGVVLVSYIRTLRDSGLSL
DQAVIQGATQRFRPVMMTATIAMLGLVPFLFSTGPGSEVQRPLAVVVIGGLITSTLLTLV
MVPTLYRWFDNRKPDPMKDVPV