Protein Info for RR42_RS33000 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 PF00563: EAL" amino acids 4 to 229 (226 residues), 219.4 bits, see alignment E=9.8e-69 PF08448: PAS_4" amino acids 271 to 379 (109 residues), 26.5 bits, see alignment E=1.3e-09 amino acids 398 to 502 (105 residues), 27.7 bits, see alignment E=5.5e-10 TIGR00229: PAS domain S-box protein" amino acids 385 to 508 (124 residues), 37.2 bits, see alignment E=1.5e-13 PF08447: PAS_3" amino acids 413 to 496 (84 residues), 62.3 bits, see alignment E=8.9e-21

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YEI8 at UniProt or InterPro

Protein Sequence (524 amino acids)

>RR42_RS33000 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MAAALDGGLLQPAFQPLICFETGAIVGFEVLARWTDPATGPVSPVTFIAIAESCGLIDRL
TSHIVRTACAQAVGWGQGFVLAFNVSPVQLRDKAVVALISDAVTQTGFPLERIQVEITEG
AMQTDIELARAIIDDLKALGIGIALDDFGTGYASLTRLHALPFDEIKIDASFVRGMLDDQ
ECRRIVTAIVGLGHSIGTRVVAEGVEREEHATILRKLGCDIGQGWLWAQALQPERIPALI
QRLGLRAPDPRPLDRSPYQRLHQMEALYVGAPVGLCFLDTRLRHVHVNGRYAEMFGAQAD
ALVGAQLGAQLGADSMPEAAGSICSLAHAVLAAQACSPVEREITANGEVYLVVAQCVNDD
IGDVIGVSLVAIGISARKRAELALRESEEHFRCSVELSPHIAWAADPDGTLCYISPNFRD
SAGYAMQDRIDAWRAAVHPDDQLRIRAEWLAWIPSGQPFATRFRIQWPDGSWRHMLSRAQ
PHLGANGAIDRWYGVISDISAQASMKQRIADLEDQVRALTAPVA