Protein Info for RR42_RS32245 in Cupriavidus basilensis FW507-4G11

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 889 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 34 to 35 (2 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 303 to 325 (23 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details amino acids 407 to 429 (23 residues), see Phobius details amino acids 460 to 479 (20 residues), see Phobius details amino acids 730 to 751 (22 residues), see Phobius details amino acids 763 to 784 (22 residues), see Phobius details amino acids 790 to 810 (21 residues), see Phobius details amino acids 822 to 842 (21 residues), see Phobius details amino acids 854 to 873 (20 residues), see Phobius details TIGR03480: hopanoid biosynthesis associated RND transporter like protein HpnN" amino acids 6 to 879 (874 residues), 1010.7 bits, see alignment E=2.6e-308 PF03176: MMPL" amino acids 229 to 430 (202 residues), 78 bits, see alignment E=6.6e-26 PF12349: Sterol-sensing" amino acids 301 to 436 (136 residues), 23.4 bits, see alignment E=4.8e-09

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 75% identity to cti:RALTA_B1959)

Predicted SEED Role

"Hopanoid-associated RND transporter, HpnN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YLP2 at UniProt or InterPro

Protein Sequence (889 amino acids)

>RR42_RS32245 RND transporter (Cupriavidus basilensis FW507-4G11)
MLTSLVIRIVQFSTRRAWPVIALALLLSVVSGVYVANHFAINTDISRLLESDQPWARRDA
AVSAAFPQRDQMILAVVQAPAPEPADAAANELADALAKQGKRFRAVSQPGGGEFFERNGL
LFVDTAKLRDVTSQLTQARPLLNALAHDPTLRGLSDTLSTTLSLPLQLGQVKLGDMAKLL
GKSADTVDRVLAGKPGALSWTGLVDSSQEPAPGHPATAFVALSPVLDYAGLQAGADAADA
IRATATKLGLAQRYGAQVRLTGSQALADDEFASVKEGAAFNGALTVLVVILILWLALRSK
RLILAVLASLAVGLAITAALGLAMVGALNMISVAFAVLFVGLGVDFGIQFGVRYRAERHV
HTDIPDALASTARAVGVPLALAAASTAAAFFCFLPTNYRGVAELGQIAGVGMLVAFLTTI
TLLPALITVFRPKDEAGRVEVPGFKWLAPADDFFERNRKAVLLATGALILAGSPLLMHLR
FDFDPLHLKDPHSESMATLLSLKDAPQAGTDNVSVLAPSLAAAQTAAARLVALPEVSRTV
TLQTFIPDDQPARLALIAAASASLMPVLTQATATPANDARLVNSLKNAARQLALAADEHP
GPGAAEAARLAASLQKLAAADAATRERAEQAIAQPLRLALARLQRALAPQPITRETLPPA
LVRDWVAPDGQALVSVSPKLPVAATPGDASSTSDSDARDAALTRFIDAVQRVEPTAVGGP
ISIRGSADTIMTAFAQAGVWAVLSITLLLWITLRRVGDVLRTLVPLLVSALVTLELCVVF
GIPLNFANVIALPLLFGIGVAFKIYYVIAWREGKTQLLQSPLTHAVLFSAATTAAAFGSL
WLSQHPGTASMGKLLALALGCTLVGAVFFQPILMGRPRERSAPATGPAH