Protein Info for RR42_RS31130 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 419 to 437 (19 residues), see Phobius details amino acids 451 to 469 (19 residues), see Phobius details amino acids 480 to 503 (24 residues), see Phobius details PF03929: PepSY_TM" amino acids 16 to 395 (380 residues), 208.1 bits, see alignment E=1.4e-65

Best Hits

Predicted SEED Role

"FIG138928: iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YSW5 at UniProt or InterPro

Protein Sequence (524 amino acids)

>RR42_RS31130 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MDAGPAMKTSLRQSMAWLHTWCGLWLGWLLFAVFLTGSLGVFHAAVTRWMQPERLMVAAG
AVDNERALAHAQHYLERHAPQSAHWEIAFPASDDAAMHLHWDGQASGGDGQAREVRLDPI
TGTVLPPARDTLGGQHFVLFHYALHAGMTGVWIIAAATMVMLVAMVSGIVTHKRFFKDFF
TFRPGKGQRSWLDAHNALGVLTLPFLLMIAYTGLVIWWPDTMPAGIRTYYEGSEAKLFRA
LGQAGWLEPKALPPAGAPAALVALPTLLADARERLAAGAGADSADSADSAIRSVAVTRPG
TSTASVAIAGPYRYDGLAFAAQRELHYDGVSGAYLSTKAEDEMVGTGGAAPLVAGSVMRT
LHMARFGGYAVKWLYFACGLAGAAMMATGLLLFSAKRGNRKAQEFGAASARVYGAIDRLN
VAAIGGLAIACAGYLWGNRLLPVALPERHEWEIAVFFAMWLAAAAHALASPPASAWPRQL
ALAGLLCLALPLLNALTTGWHVLRYLAHGDGQSAGLELGALALG