Protein Info for RR42_RS30945 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome C peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 102 to 409 (308 residues), 172.7 bits, see alignment E=4.9e-55 PF16576: HlyD_D23" amino acids 113 to 343 (231 residues), 142.2 bits, see alignment E=2.2e-45 PF13533: Biotin_lipoyl_2" amino acids 129 to 168 (40 residues), 25.2 bits, see alignment 1.6e-09 PF13437: HlyD_3" amino acids 241 to 340 (100 residues), 66.2 bits, see alignment E=6.1e-22

Best Hits

KEGG orthology group: None (inferred from 57% identity to cti:RALTA_B2172)

MetaCyc: 51% identical to cobalt-zinc-cadmium resistance protein (Pseudomonas putida KT2440)
RXN1G01-61; TRANS-RXN0-200; TRANS-RXN0-244

Predicted SEED Role

"Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YKW3 at UniProt or InterPro

Protein Sequence (428 amino acids)

>RR42_RS30945 cytochrome C peroxidase (Cupriavidus basilensis FW507-4G11)
MAITNKQKTSIAIILAGGAIAAAGLIFAGRGSADATTEAGHAAGAHSEDAAHGDGEHHGG
PASAAHGDAARHTDGEHHETQEKEGHVEMTPAQVQAAGLTLRTAGPAHIEGTASFPGEIR
FNEDRTAHVVPRVAGVVQGVSANLGQQVKKGDLLAVLASTALSDQRSELLAAQKRLELAE
STFQREKKLWEDKISAEQDYLAARTALQEARIATQNATQKLTAIGVSGNAGGAKSLNRFE
LRAPFDGTVVEKHLALGEAVAADANVFVISDLSTVWAEFVIAPKDLDRVRVGEKVKIAST
AFDGKAEGTVSYVGSLLGQQTRTATARVTLPNPKTAWRPGLFVTVGVTDSSAEVPVAIEA
EALQSNGDQQVVFAVVPGGFQAQPVKTGRSDGKLVEITEGLKAGTQYVAGNSFVIKAELG
KAGAEHSH