Protein Info for RR42_RS30775 in Cupriavidus basilensis FW507-4G11

Annotation: fatty acid hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 158 to 182 (25 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 251 to 269 (19 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 205 to 338 (134 residues), 102.8 bits, see alignment E=1e-33

Best Hits

KEGG orthology group: None (inferred from 75% identity to rsl:RPSI07_mp0624)

Predicted SEED Role

"Sterol desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDG1 at UniProt or InterPro

Protein Sequence (381 amino acids)

>RR42_RS30775 fatty acid hydroxylase (Cupriavidus basilensis FW507-4G11)
MRDTRELLGSSGELEAGRGMITAILALALGGLSLLGVIAFHFPQYLTTPELRHKYSVDVL
RHVLFAALLVSGGMSLSNLVLGRKRSLNAAAFALVALAVALGGSRVAVGDFPDHTPYIGL
DWFILDLLGSTLIFVVIEKMFPLYRGQAVFRREWQTDLVHFAVNHFIVGLILLTVNFLIF
RLFGWLVRDSVHAFVGGIPFVLQLLLCILAADLAQYWTHRAYHEVPFLWKFHAVHHSTKT
MDWLAGSRQHMLELVFTRVLVLAPLYVLGFNKSVIDAYIIIVGFQAVFNHANVHLPWGPL
RYLVVTPDFHHWHHASDDEAIDKNYAAHYAFLDYLFGTAVKSGKRFPEKYGVVGDYMPDG
FVRQQLFPFRPMPPARKDDEA