Protein Info for RR42_RS30530 in Cupriavidus basilensis FW507-4G11

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 99 to 116 (18 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 348 to 374 (27 residues), see Phobius details amino acids 394 to 411 (18 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 9 to 405 (397 residues), 235.1 bits, see alignment E=7.5e-74 PF07690: MFS_1" amino acids 9 to 399 (391 residues), 173.4 bits, see alignment E=3.2e-55

Best Hits

KEGG orthology group: None (inferred from 73% identity to bxe:Bxe_B1202)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDA1 at UniProt or InterPro

Protein Sequence (464 amino acids)

>RR42_RS30530 MFS transporter (Cupriavidus basilensis FW507-4G11)
MRFLPYLVAATFFMEYLDTTVLATALPQMAQSFGVGPNDLSLGMTAYMLALAVFIPISGW
IADRFGSRTVFGGAIVVFTVASVLCGASNGLFAFTAARVLQGIGGAMMVPVGRLIVVRNT
DKRQLIKAISTITWPAIVAPVVGPPIGGFITTYASWRWIFLLNVPFGIAALIATFMMIRN
ERASEPKPLDIVGFVLSGTTLTFVLYGTELASQQGASLATAGAFVAAGLVLGVLAVRHAA
GREHPLLDFTTLRVPTFSVTVITGSVTRIGIGAVPYLMPLLFQVGFGLSAFRSGLLLLAS
ALGNLGMKALTTRVLQHYGFRATAIVDVAFASVFIVACGLLTPETPLAIVLFVVFIYGVT
RSMQFSTLATLAYADIPQNQMSSANTLWNAAQQMSIGLGIAFGSLSLRIAASLRAQASDV
PHFTLGDFRWAFLFAGVLTLVSLIGYVRLAPDAGRHLSSRRAAG