Protein Info for RR42_RS30250 in Cupriavidus basilensis FW507-4G11

Annotation: peptide ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 232 to 257 (26 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 102 (102 residues), 53.7 bits, see alignment E=2.3e-18 PF00528: BPD_transp_1" amino acids 113 to 312 (200 residues), 139.9 bits, see alignment E=8.1e-45

Best Hits

Swiss-Prot: 51% identical to Y4TP_SINFN: Probable peptide ABC transporter permease protein y4tP (NGR_a01430) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 70% identity to rru:Rru_A0980)

MetaCyc: 42% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YSG4 at UniProt or InterPro

Protein Sequence (313 amino acids)

>RR42_RS30250 peptide ABC transporter (Cupriavidus basilensis FW507-4G11)
MAFFVLRRLIATLPVLVIVAFIVFLMLRLTPGDPAAAIVGDAGTAADIARIRLQLGLDQS
LAHQFLAWAARLVHGDLGESFYLKRSVSELIAQRLEPTVALAGVTITLAVLIAVPLGVLA
AWRHGGWLDRCLMSFSVLGFSIPVFVVGYLMIWGFSLKLGWLPVQGYARLSEGLGAWLRQ
LVVPAVTLSIVDIALIARVTRAAVAEALTEDHVRTARAKGIPEYRVLIRHALANAAVPIV
TVIGVGVALLVGGVVITETVFAIPGLGALTVEAILSRDYPVIQGVTLFFSFVYVLVNLLV
DLSYIFFDPRIRY