Protein Info for RR42_RS29470 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 30 to 373 (344 residues), 237.7 bits, see alignment E=4.7e-74 PF13433: Peripla_BP_5" amino acids 33 to 342 (310 residues), 67.6 bits, see alignment E=1.6e-22 PF01094: ANF_receptor" amino acids 51 to 333 (283 residues), 75.2 bits, see alignment E=7.5e-25

Best Hits

Predicted SEED Role

"Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCQ0 at UniProt or InterPro

Protein Sequence (390 amino acids)

>RR42_RS29470 ABC transporter substrate-binding protein (Cupriavidus basilensis FW507-4G11)
MILKTTIAAIALALSAGASAQTRGVTDKEIVLGLITDMSGPIVNYGKESRNGMTMAVEEI
NARGGVQGRKLRVVVEDNGYEPKRAVLAAQKLVTQDGVFAIIGHLGTAPNMATLPFLVQS
KVFNFMPQSAARDMYEPASPYKIALGPSNFLMSTTIMDYFFKQKPYQRVGALYQDDDYGR
ESVEGVQAYLKSRNMTLVEKVSYKRGATDFSSQMARLKAANCDLVFNASTMREYIASVQE
ARKIGFNPVFAGTSANYAHQVPLLGGKAMEGLHAAAFIMLPYADDANPAVRQWVAAYKKR
FNEDPGVYSMFSYYAYTTFATIADKAGRNLSAESFNAAMESTKLPQDALGNPGFNVSASN
RLSNDRIRIMKVAGDKWIPASDLLAPPKMN