Protein Info for RR42_RS27835 in Cupriavidus basilensis FW507-4G11

Annotation: betaine-aldehyde dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 TIGR02299: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase" amino acids 2 to 485 (484 residues), 739 bits, see alignment E=1.1e-226 PF00171: Aldedh" amino acids 13 to 472 (460 residues), 574.2 bits, see alignment E=9e-177

Best Hits

Swiss-Prot: 77% identical to HPCC_ECOLX: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (hpcC) from Escherichia coli

KEGG orthology group: K00151, 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC: 1.2.1.60] (inferred from 87% identity to brh:RBRH_00356)

MetaCyc: 79% identical to subunit of 5-carboxymethyl-2-hydroxymuconic semialdehyde dehydrogenase (Escherichia coli B)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase. [EC: 1.2.1.60]

Predicted SEED Role

"5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)" in subsystem 4-Hydroxyphenylacetic acid catabolic pathway or Aromatic amino acid degradation or Central meta-cleavage pathway of aromatic compound degradation (EC 1.2.1.60)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.60

Use Curated BLAST to search for 1.2.1.60

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YKG8 at UniProt or InterPro

Protein Sequence (486 amino acids)

>RR42_RS27835 betaine-aldehyde dehydrogenase (Cupriavidus basilensis FW507-4G11)
MIKHWINGKQVDSKDTFTTWNPATGEEIATVAAGGEAEVNAAVAAAKAAFPKWANTPAKE
RARIMRRLADLITEHVPHLAALETQDTGLPIAQTGKQLIPRAAENFNFFAEVCVQMNGRT
YPVDDQMLNYTLYQPVGVCALISPWNVPFMTATWKVAPCLALGNTAVLKMSELSPLTADQ
LGMLALEAGVPAGVLNVVQGYGASAGDALVRHPDVRAVSFTGGTATGKRIIERAGLKKFS
MELGGKSPVLVFDDADLERALDAALFTIFSINGERCTAGSRIFVQDTVYDDFAGKFAERA
RRLRVGDPTSEQTHVGAMITQQHWEKVTGYIRLGEQEGATILAGGAERPSDLPAHLRNGN
FVQPTVLANVENHMRVAQEEIFGPVACLIPFKGEDDGLAMANDTAYGLASYIWTQDVGKV
HRLARGIEAGMVFVNSQNVRDLRQPFGGTKASGTGREGGEFSFEVFAEVKNVCISMGGHH
IPRWGV