Protein Info for RR42_RS27120 in Cupriavidus basilensis FW507-4G11

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 transmembrane" amino acids 19 to 40 (22 residues), see Phobius details amino acids 53 to 79 (27 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 140 to 164 (25 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 11 to 107 (97 residues), 98.6 bits, see alignment E=1.3e-32 PF00528: BPD_transp_1" amino acids 34 to 213 (180 residues), 59.3 bits, see alignment E=2.2e-20

Best Hits

Swiss-Prot: 39% identical to YCKA_BACSU: Probable amino-acid ABC transporter permease protein YckA (yckA) from Bacillus subtilis (strain 168)

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 76% identity to ret:RHE_PF00160)

MetaCyc: 38% identical to cystine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-290 [EC: 7.4.2.12]; 7.4.2.12 [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]

Predicted SEED Role

"Putative amino acid ABC transporter, permease protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIN4 at UniProt or InterPro

Protein Sequence (218 amino acids)

>RR42_RS27120 amino acid ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MTDFSTWDILRNLLMAVRWTVVLSLVAFAGGAVIGLLVLLMRISRRAPARRAAWAFIEVF
QGTPLLMQLFLAFFGLALFGVEIPAWLAAGLALSLWSGAYLAEIWRGCVEAIPKGQWEAA
GCLSLGHLQQMRYVILPQALRIAIAPTVGFVVQIIKGTALASIIGFVELSKAGTVITNAT
FSPFTVYALVALIYFALCWPLSRYSRYLERKLNVAHRH