Protein Info for RR42_RS26655 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF03401: TctC" amino acids 65 to 332 (268 residues), 224.5 bits, see alignment E=7.2e-71

Best Hits

Swiss-Prot: 39% identical to YGB7_CUPNE: UPF0065 protein in gbd 5'region from Cupriavidus necator

KEGG orthology group: None (inferred from 86% identity to reu:Reut_B4279)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIF4 at UniProt or InterPro

Protein Sequence (340 amino acids)

>RR42_RS26655 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MTAPHGINHGRRRLLIGGAAAATAATAGSAGLLLPGLARAADYPDRPITFICPWPVGGTA
DQSMRALCQVASGVLKQSIVVENRAGASGMIGTKALARAKPDGYTIGQVPISVTRFSQLG
MLQLDPRSELTYLARTSGQTFGIAVPANSRFKSLKDVVAEAKAHPGKLTYAHAGIGGATH
VGMEEFAQAAGVRFNAIAYKGGAQALQDVLAGQVDLLADSSSWAPHVEAGKLRLLATWGD
QRTPRFKDTPTLKELGYNVVVEAPNGIGAPIGLDPAVEKKLRDAFRQAVASKEFQQVAAR
IDAPVMYLDGPEYKRYISTVYDQETHLIQRLKLKELLQQG