Protein Info for RR42_RS25100 in Cupriavidus basilensis FW507-4G11

Annotation: dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 transmembrane" amino acids 57 to 75 (19 residues), see Phobius details PF19315: MC_hydratase" amino acids 3 to 146 (144 residues), 55.5 bits, see alignment E=8.2e-19 PF01575: MaoC_dehydratas" amino acids 11 to 127 (117 residues), 68.5 bits, see alignment E=6.2e-23 PF13452: MaoC_dehydrat_N" amino acids 12 to 138 (127 residues), 28.7 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: None (inferred from 96% identity to bur:Bcep18194_C7289)

Predicted SEED Role

"Acyl dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIJ9 at UniProt or InterPro

Protein Sequence (153 amino acids)

>RR42_RS25100 dehydratase (Cupriavidus basilensis FW507-4G11)
MAGLYFEEFKPGMVIEHAIRRTVTETDNVLFSAMTYNCAPLHIDAEYSKNTFYGQRLVNS
MFLLALVAGITVYETTLGTTLGNLGFGEIAFPKPTFHGDTIRVETEIIETRISKSRTDSG
IVTFKHVAKNQRDEIVCTAVRTGLMMLRPADKA