Protein Info for RR42_RS24790 in Cupriavidus basilensis FW507-4G11

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF00126: HTH_1" amino acids 18 to 73 (56 residues), 48.5 bits, see alignment E=7.1e-17 PF03466: LysR_substrate" amino acids 99 to 302 (204 residues), 106.8 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: None (inferred from 94% identity to reu:Reut_A1836)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YHE1 at UniProt or InterPro

Protein Sequence (313 amino acids)

>RR42_RS24790 LysR family transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MGTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLL
ERGPKGVVPSPAGAVLVHYARRIFENVEDMGSEISAFTEGMRGKVVVASARSIIAPFLAR
ELGDFARDFPMVELAVRELENAQILEAVSRSDADIGVFAMAHELELGGVDVTPYRRDRLV
AVVPRSHALGAHETVTFDDLLPERVIPVDAMLGAFRVAAKRLGKEFAPAFSVRSAGTAIS
LVQAGLGVTVQPECLVSHQLFGDVSCIPLDEPWAVRTIHIATPRGRALSPVAAALMKQLL
DRPGEQTPAQAQD