Protein Info for RR42_RS23645 in Cupriavidus basilensis FW507-4G11

Annotation: flagellar hook protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 PF02465: FliD_N" amino acids 8 to 104 (97 residues), 79.4 bits, see alignment E=2.7e-26 PF07195: FliD_C" amino acids 236 to 459 (224 residues), 173.6 bits, see alignment E=4.8e-55

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 52% identity to rme:Rmet_5254)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y9N6 at UniProt or InterPro

Protein Sequence (476 amino acids)

>RR42_RS23645 flagellar hook protein (Cupriavidus basilensis FW507-4G11)
MSSLGVGSGLDLSTLLTNLKSAEQLKLTPITDQQSAVNTQLSAYGVLQGALASFQSAATA
LGTASLYSSTTTSSSNTSVLSTSANNTAVAGSYAVNVSQLAQSQTLVANGITDSTGQQLG
SATIQIQFGTTTTSGGTTTFTPGSAAAASININGTNNTLSGIRDAINAANAGVTASIVND
GSSTPYHLVLTSNTTGAASSMSVSVSSNGSGDPTTISNLLTYNPGGTTAMTQNIAAQDAK
LSINGLAITSASNSVQGAAQGVTLNLATTGTSTVNVASNTSAMATGVQSFVTAYNTLQST
AAQLSAYDPSTKTAGALLGDSTLRVIENQLRNVINTPQTATGATGLTNLTQIGISFNADG
SMSLDSSKLNAALTTNRTGVAQLFSGTDGKSGYGNQLSSAAAGFVSPTGALTTATNGVNA
TLKSLATQYTNVSAQIDAAVAQYQTEFQNLDTLMAQLNSTKTYLTQQFSSSTSTSG