Protein Info for RR42_RS23345 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF00551: Formyl_trans_N" amino acids 56 to 162 (107 residues), 53.4 bits, see alignment E=2.7e-18 PF02911: Formyl_trans_C" amino acids 191 to 267 (77 residues), 29.6 bits, see alignment E=6.2e-11

Best Hits

KEGG orthology group: K00604, methionyl-tRNA formyltransferase [EC: 2.1.2.9] (inferred from 46% identity to cvi:CV_2818)

Predicted SEED Role

"Methionyl-tRNA formyltransferase (EC 2.1.2.9)" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase or Folate Biosynthesis (EC 2.1.2.9)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.2.9

Use Curated BLAST to search for 2.1.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGQ7 at UniProt or InterPro

Protein Sequence (281 amino acids)

>RR42_RS23345 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MTASDRYVGVFDAFVQHGWEPVKLFTARVDGRMHRTDAILDRAQARKIDIQLSPMNDHSL
DGLRDLGCDLLVVASYAWRIGDWASRIPMAINFHPSPLPVGRGPYPLPRAILDGLATWGV
SCHKISKDFDQGDILAQRQFDVAPDETHESLDLKVQRATSRLAHEVAFNLDALWKNAVPQ
GAGSYIPFWTDADRTLDFSLTPERINAMLRAFGRHECLARINGKVVHVIDAHTWREPHNL
PPGVVDHVDGERFVVSCTGGFIAILEWNLLPPGQMRGTAPR