Protein Info for RR42_RS22905 in Cupriavidus basilensis FW507-4G11

Annotation: myristoyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13379: NMT1_2" amino acids 32 to 257 (226 residues), 51.6 bits, see alignment E=1.2e-17 PF09084: NMT1" amino acids 41 to 246 (206 residues), 103.7 bits, see alignment E=1.4e-33

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 50% identity to mno:Mnod_3417)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, substrate-binding component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y9A1 at UniProt or InterPro

Protein Sequence (329 amino acids)

>RR42_RS22905 myristoyl transferase (Cupriavidus basilensis FW507-4G11)
MKLARRACATATSLMLFAGAAAAQAPVQKLLVRMDYSPWGMHAAMHLAKQKGWFQEAGLD
VEVQDGTGTINTLQLLAAGQADVGQVQLGTMAVAKENGLDLMSIAGFARKGDLAVMVDEK
LGVRSVQDLVGKKLVCFTTSPWAPFIDPYFKANKIAKGKATIVMVSPAAMISTYASGNSD
GFLSQAPFGQPMVSKVRPAKALLLSDSGINFPSYGLVATPQRLAEKGAALKKFAQVQVRA
WEYIYAGHADEGVAAILAQRPNAKLDPQILLAQIQAYRAFFDSPTHKGLPIGKQSDADWA
AAIQSMEQAGMIKPGRKPADYYTNAMLAN