Protein Info for RR42_RS22845 in Cupriavidus basilensis FW507-4G11

Annotation: cell envelope biogenesis protein OmpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00691: OmpA" amino acids 61 to 155 (95 residues), 68.4 bits, see alignment E=2.9e-23

Best Hits

Swiss-Prot: 39% identical to YFIB_ECOLI: Putative lipoprotein YfiB (yfiB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 63% identity to reh:H16_A2519)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGE8 at UniProt or InterPro

Protein Sequence (164 amino acids)

>RR42_RS22845 cell envelope biogenesis protein OmpA (Cupriavidus basilensis FW507-4G11)
MQAAGSRCITAAVIAVPLALAACQTVPAPKLTAVQVEALQSQGFQLTENGWELDFSEKVL
FGLDEDVISADRQVAVQRIGRALSGAGIDHVRLDGHTDDSGSADYNQQLSVRRAQAVANV
LATTGFQAESIQVRGLGKSKPVVDNRTAAGRAENRRVAIVVTIE