Protein Info for RR42_RS20870 in Cupriavidus basilensis FW507-4G11

Annotation: integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 PF12482: DUF3701" amino acids 98 to 175 (78 residues), 70.1 bits, see alignment E=7.6e-24

Best Hits

Predicted SEED Role

"FIG00974669: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFE2 at UniProt or InterPro

Protein Sequence (528 amino acids)

>RR42_RS20870 integrase (Cupriavidus basilensis FW507-4G11)
MQPGKAPNLSLTRSEFAAVRAYVQGMPAAMVAGRYLSDDSDDDDAGGESALRVLLGLRDR
MVQLAHLHSRQDLAELLEGGPGRSNRGMDRRVEALAELERLGTAQPRADHGIELWFSPAL
ARRLRAQKISNLHILVNLANRHGNAWWRSVPRIGALAGAAINRWLADHRDVVRDDRGEPL
LREHVFARGRLAEAALGPRLHQLVPLELMREEESGTVTAIPDNSDLKSAFGSDLVAVRAW
LAANRAQQSTWLAYRKEAERLLLWTAMERRKPLAMLDRQDREEYFAFLRHPAPVRLWVGP
RAPRESAAWRPFTGPLSESSVLHASRILGALFEWLQGQGHIAEHVWRPESQSRRTALRLA
VPVAAGSTLEPESLARFLDWLAAQGREPEGIRYRAADAAVRLLQEQPIGFASLATFTRDK
LGVHEEVGTHEEVGTPSAVDEGLSEAARGALKRHWQDRGLDWGSLAGQPIVLVGPPRLPP
TGRARRKAEMSPGSGYSVRGLHALLSQVIERYREAEDAEFAVRSPRDL