Protein Info for RR42_RS20245 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 44 to 58 (15 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 155 to 179 (25 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details amino acids 288 to 311 (24 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 335 (324 residues), 62.7 bits, see alignment E=1.6e-21

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 89% identity to reu:Reut_A3363)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFC9 at UniProt or InterPro

Protein Sequence (350 amino acids)

>RR42_RS20245 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MDLSIAAILAQDGITSGAIYALLALALVLVFSVTRVIFIPQGEFVAYGALTLAAIQSGHA
PQSSWLLLVMGVLTFVYETVTILRSAELRRTAPRRIAVLAGKYLVFPLAVHLLAQNFDGQ
SMPMLAQIALTLLIVIPLGPMLYRLAYQPLAEASTLVLLIVSVGVHFALVGLGLVMFGAE
GSRTAPFSEARFEVGSLTISGQSLWVVGVSALMIAGLYFYFERTIVGKALRATAVNRLGA
RLVGIGTTQAGRLSFTLAAAMGALCGILIAPLTTVYYESGFLIGLKGFVGAIVGGLVSYP
VAAAGAILVGLLESYSSFWASAFKEVIVFTLILPVLLWRSLTSKHVEDEE