Protein Info for RR42_RS20020 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 82 to 157 (76 residues), 47.5 bits, see alignment E=2.7e-16 amino acids 214 to 288 (75 residues), 56.2 bits, see alignment E=5.4e-19 PF00034: Cytochrom_C" amino acids 82 to 157 (76 residues), 27.2 bits, see alignment E=1.3e-09 amino acids 216 to 290 (75 residues), 27.4 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 86% identity to reu:Reut_A3322)

Predicted SEED Role

"Cytochrome c5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF82 at UniProt or InterPro

Protein Sequence (293 amino acids)

>RR42_RS20020 cytochrome C (Cupriavidus basilensis FW507-4G11)
MSDVHNAQDEHESPIKTPKQLIAVVIAAFLVPIIVIILLVNFVGHGAKEGAGSTTTVEAV
NDRIKPVASLELKDPNAPRVFKTGEQVYKEVCAACHATGAAGAPKYSNAGDWAPRIGQGF
DGLLNSVLHGKGAMQARAGTTADDYSDYELGRAVVYMADAGGAKFPEPAAPAAAPATAAA
SDAAAPAAAAAPAAPAAAPAAAAPAAAAAAAPASAEVGKKVYEQVCAACHAAGVAGAPKF
GDKAAWAPRLKEGMDAVHAFALKGKGVMPPKGGYAGPDADVMAAVDYMANASK