Protein Info for RR42_RS19265 in Cupriavidus basilensis FW507-4G11

Annotation: alanine-phosphoribitol ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF17885: Smoa_sbd" amino acids 149 to 256 (108 residues), 150 bits, see alignment E=1.2e-48

Best Hits

KEGG orthology group: None (inferred from 85% identity to cti:RALTA_A2947)

Predicted SEED Role

"putative oxygenase subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YKV2 at UniProt or InterPro

Protein Sequence (413 amino acids)

>RR42_RS19265 alanine-phosphoribitol ligase (Cupriavidus basilensis FW507-4G11)
MSQRIAIVGAGQSGLQMALGLQAKGYQVTLLTNRTPDQVRAGKVMSSQCMFDRSLQAERE
LGLNWWDDSCPPVEGIGLAIPHPEQLGARLIDWAARLERPAQAVDQRLKMPAWMEAFAER
GGDLRIADAGIDELEALTLEHDLVLLAAGKGEIVSRFERDAARSPFTAPQRALALTYVNG
MTPRTPYSRVCFNLIPGIGEYFVFPALTLSGPCEIMVFEGIPGGPMDQWAEARTPEQHLA
ESLRILRTWLPWEAQRCDNVTLTDEQGILAGRFTPTVRHPVMTLPSGRLVFGMADAVVVN
DPITGQGSNNAAKCCKVYLEAIVARGDRAFDAAWMAQTFASYWQYAGDVVNWTNSLLTPP
PPHILALLGAAGQAPALAARIANGFDNPPDFFPWWADPAACQQLIDRHLPQAA