Protein Info for RR42_RS19090 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 35 to 117 (83 residues), 29 bits, see alignment E=1.7e-10 amino acids 133 to 215 (83 residues), 32.5 bits, see alignment E=1.3e-11 PF00034: Cytochrom_C" amino acids 37 to 119 (83 residues), 35.2 bits, see alignment E=4e-12 amino acids 134 to 216 (83 residues), 38.4 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 91% identity to reu:Reut_A3147)

Predicted SEED Role

"Cytochrome c4" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YKS5 at UniProt or InterPro

Protein Sequence (219 amino acids)

>RR42_RS19090 cytochrome C (Cupriavidus basilensis FW507-4G11)
MNRIAKLLAVVALALPATAMTGLASAAEQAAAKADPAKGETLYTQGAPDRNVPACLSCHG
ANGNSGGAANPKLAAQHPEYVHKQLDDFKAKARNNAIMSPYAAALSEQEMKDVGAYLAKQ
TLKPATAKNKDTIEAGQKIYRGGIAAKGVPACAACHGPTGAGIPAQYPRIGGQWSEYTEA
QLVAFRQGTRKNNPVMTTIAAKMSDAEIKAVADYVAGIR