Protein Info for RR42_RS19055 in Cupriavidus basilensis FW507-4G11

Annotation: sulfite oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 198 to 215 (18 residues), see Phobius details PF01794: Ferric_reduct" amino acids 66 to 181 (116 residues), 62.5 bits, see alignment E=2.1e-21

Best Hits

Swiss-Prot: 73% identical to MSRQ_RALSO: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: None (inferred from 82% identity to rme:Rmet_3277)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YEJ3 at UniProt or InterPro

Protein Sequence (226 amino acids)

>RR42_RS19055 sulfite oxidase (Cupriavidus basilensis FW507-4G11)
MSPSRQAVRSSRAAGQPGLATLAPERVRTVKVAVWLLAMLPFLRLLCLGFTDQFGANPLE
FVTRSTGTWTLVMLCVTLAVTPLRRLTGWNWLIRLRRMLGLFAFFYALQHFLLWLAVDRG
FDVAYMIKDIAKRPFITVGFAAFVLMVPLAATSANVMVKWLGGKRWQGLHRAVYAIAVLA
ILHYWWHKAGKHDFGTVSIYAAVVFGLLAMRIWWWRKPATGLKAQR