Protein Info for RR42_RS18330 in Cupriavidus basilensis FW507-4G11

Annotation: sulfonate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 376 to 401 (26 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 449 to 473 (25 residues), see Phobius details amino acids 494 to 515 (22 residues), see Phobius details amino acids 552 to 571 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 95 to 263 (169 residues), 53.6 bits, see alignment E=1.2e-18 amino acids 399 to 565 (167 residues), 50.3 bits, see alignment E=1.3e-17

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 88% identity to reu:Reut_A3030)

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGN9 at UniProt or InterPro

Protein Sequence (584 amino acids)

>RR42_RS18330 sulfonate ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MQQAEHDQASSVTSRGYASQLLTAPPNRFDLALLPIILAVIVLVAFAARQMNVPYQPGEP
LDVHLDIAYLPYYLMRTSIRMMIALGASLLFSFAFAALASKNRTAEKVMVPALDILQSIP
VLGFLSITVTGFIALFPGSLVGVECAAIFAIFTSQAWNMAFSLYQSIRTIPTDLVEAAAM
FRLSPWQKFWRLEVPFAMPGLLWNMMMSMSGGWFFVVASEAISVSGNDIRLPGIGSYISL
AIQQQNLAAIGWAILAMLIGIILYDQLLFRPLIAWADRFRFETMAQETEPQSWLLNLLRR
SEWVRVLLGRTAALAERTLAWGSGRKAVAPKANDGRRAMWIERAGNVIIIVIAMLALYRV
MHFVRTEVGWAEVGHVLWLGTLTMVRVIVLIALAAVIWVPIGIRIGLNPKVARVAQPVAQ
FLAAFPANLMFPLVVMLIVRFGLNPEIWLSPLMIFGTQWYILFNVIAGASGIPTELKLAA
RNFGLRGWLLWKRFLVPAVFPSLLTGLVTAAGGSWNASIVSEYVTWGDRTLVATGLGSYI
AEMTSKGDFPRIALGIGVMAIFVVGFNRLLWNRLYLLAQERTRL