Protein Info for RR42_RS17260 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 PF00005: ABC_tran" amino acids 24 to 170 (147 residues), 97.1 bits, see alignment E=1.5e-31

Best Hits

KEGG orthology group: K06857, putative tungstate transport system ATP-binding protein (inferred from 81% identity to rme:Rmet_2919)

Predicted SEED Role

"ABC-type tungstate transport system, ATP-binding protein" in subsystem ABC transporter tungstate (TC 3.A.1.6.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFX1 at UniProt or InterPro

Protein Sequence (224 amino acids)

>RR42_RS17260 ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MPPLLTVRGLQRQVGARRLFDIAELAFPRAAVVVLTGVNGAGKSTLLRMVAGLERAPGAS
VAWTGADGTPRNAALDPLPAALRQRIAYLHQHPYLFRTSVRENIAYGLKARGMPDDEVRR
RVGAALGWAGITHVQDTAPECLSGGEVQRVALARAKVLEPDLLLLDEPTSSLDGHAREQV
IGLVQDLAAEGRSVVMVCHDRELINLPGVVRWKLGDGRLDTRHP