Protein Info for RR42_RS17195 in Cupriavidus basilensis FW507-4G11

Annotation: transglutaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF13369: Transglut_core2" amino acids 43 to 198 (156 residues), 170.6 bits, see alignment E=1.8e-54 PF13371: TPR_9" amino acids 200 to 271 (72 residues), 84.5 bits, see alignment E=4.1e-28

Best Hits

KEGG orthology group: None (inferred from 92% identity to reu:Reut_A2767)

Predicted SEED Role

"Protein sirB1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDK5 at UniProt or InterPro

Protein Sequence (282 amino acids)

>RR42_RS17195 transglutaminase (Cupriavidus basilensis FW507-4G11)
MTTTKVLEYFASLVADENGIPLTETVLSIAQDAYPDLDLQAELAALDMLAVRLKRRVAEG
TPAIQRMRLLNHFFYRDLGFGANANDYYDPDNSYLNVVLKQRRGIPISLAVLYMELGQHI
GLPLKGVSFPNHFLVRMSIPAGEVVVDPLTGETLSKEQLQDMLDPHLEREGIADPNEVPL
GLFLQVASHREIVARMLRNLKSIYLQESRWQRLLAVQNRLVILLPGSIEEVRDRGLAYAN
LECFRPALADLEAYVMARPDAADTTQIRDRMPALRMMSRSVS