Protein Info for RR42_RS16700 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 135 to 157 (23 residues), see Phobius details PF09849: DUF2076" amino acids 1 to 222 (222 residues), 173 bits, see alignment E=6.7e-55

Best Hits

KEGG orthology group: K09945, hypothetical protein (inferred from 63% identity to reu:Reut_A0612)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDA4 at UniProt or InterPro

Protein Sequence (232 amino acids)

>RR42_RS16700 ABC transporter substrate-binding protein (Cupriavidus basilensis FW507-4G11)
MTPQEMQALEGFLTQLTQARAGAKDPQADALIADAVARQPDAAYLLVQRAMMLDHALATA
KAQISTLQSQLQMAQANGANRFLDPENAWGNSANRVAPSPVMPPPMAAPVAPPQAFQAAQ
PAPVQPSRPGFLSGGLGGALGGIATTAAGVAGGALLFQGIENMFHRNGNGNSASGFLGQP
GAGAQPTETVVNNYYGNDDRSPLGSPDAALDSGLLDDASGNDDFLSDDTWNA